Index

N

neoReference (C++ struct) neoReference::base (C++ member) neoReference::gid (C++ member) neoReference::lcom (C++ member) neoReference::lname (C++ member) neoReference::lqual (C++ member)

neoReference::lseq (C++ member) neoReference::lstrand (C++ member) neoReference::pcom (C++ member) neoReference::pname (C++ member) neoReference::pqual (C++ member) neoReference::pseq (C++ member) neoReference::pstrand (C++ member)

O

OneSeqInfo (C++ type)

R

rabbit (C++ type) rabbit::core::Buffer (C++ class) rabbit::core::Buffer::Extend (C++ function) rabbit::core::Buffer::Pointer (C++ function) rabbit::core::DataChunk (C++ struct) rabbit::core::DataChunk::data (C++ member) rabbit::core::DataChunk::DefaultBufferSize (C++ member) rabbit::core::DataChunk::next (C++ member) rabbit::core::DataChunk::size (C++ member) rabbit::core::TDataPool (C++ class) rabbit::core::TDataPool::Acquire (C++ function) rabbit::core::TDataPool::Release (C++ function) rabbit::core::TDataPool::TDataPool (C++ function) rabbit::fa (C++ type) rabbit::fa::chunkFormat (C++ function), [1] rabbit::fa::chunkListFormat (C++ function) rabbit::fa::FastaChunk (C++ struct) rabbit::fa::FastaFileReader (C++ class) rabbit::fa::FastaFileReader::Close (C++ function) rabbit::fa::FastaFileReader::Eof (C++ function) rabbit::fa::FastaFileReader::FastaFileReader (C++ function) rabbit::fa::FastaFileReader::Read (C++ function) rabbit::fa::FastaFileReader::readNextChunk (C++ function) rabbit::fa::FastaFileReader::readNextChunkList (C++ function)

rabbit::fa::getLine (C++ function) rabbit::fa::getNextSeq (C++ function) rabbit::fa::getSequence (C++ function) rabbit::fq (C++ type) rabbit::fq::chunkFormat (C++ function), [1], [2], [3] rabbit::fq::FastqChunk (C++ struct) rabbit::fq::FastqChunk::chunk (C++ member) rabbit::fq::FastqFileReader (C++ class) rabbit::fq::FastqFileReader::FastqFileReader (C++ function), [1] rabbit::fq::FastqFileReader::readNextChunk (C++ function) rabbit::fq::FastqFileReader::readNextPairChunk (C++ function) rabbit::fq::FastqFileReader::readNextPairChunk1 (C++ function) rabbit::fq::FastqPairChunk (C++ struct) rabbit::fq::FastqPairChunk::chunk (C++ member) rabbit::fq::getLine (C++ function) rabbit::fq::neoGetLine (C++ function) rabbit::fq::print_read (C++ function) Reference (C++ struct) Reference::comment (C++ member) Reference::gid (C++ member) Reference::length (C++ member) Reference::name (C++ member) Reference::quality (C++ member) Reference::seq (C++ member) Reference::strand (C++ member)

S

SeqInfos (C++ type)

std (C++ type)